2022
Jones A, Kasun GW, Stover J, Stedman K, de la Higuera I (2022) CRUISE, a Tool for the Detection of Iterons in Circular Rep-Encoding Single-Stranded DNA Viruses. Microbiology Resource Announcements. 12(1):e0112322
2021
Pratt A, Torrance E, Kasun GW, Stedman K, de la Higuera I (2021) StemLoop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs. Microbiology Resource Announcements. 10(26):e0042421
2020
de la Higuera I, Kasun GW, Torrance E, Pratt A, Maluenda A, Colombet J, Bisseux M, Ravet V, Dayaram A, Stainton D, Kraberger S,Zawar-Reza P, Goldstien S, Briskie JV, White R,Taylor H, Gomez C, Ainley DG, Harding JS,Fontenele RS, Schreck J, Ribeiro SG, Oswald SA, Arnold JM, Enault F, Varsani A, Stedman K (2020) Unveiling Crucivirus Diversity by Mining Metagenomic Data. mBio 11:e01410-20.
2019
Ignacio de la Higuera-Hernandez, Ellis L. Torrance, Alyssa A. Pratt, George W. Kasun, Amberlee Maluenda, and Kenneth M. Stedman. Genome Sequences of Three Cruciviruses Found in the Willamette Valley (Oregon). (2019) Microbiology Resource Announcements, 8 (23) e00447-19; DOI: 10.1128/MRA.00447-19. https://mra.asm.org/content/8/23/e00447-19
2018
D.A. Goodman, and K.M. Stedman. Comparative Genetic and Genomic Analysis of the Novel Sulfolobus Spindle-shaped Virus SSV10. (2018) Virus Evolution, 4(2), vey022. doi: 10.1093/ve/vey022. PMID 30094064
K. Tsuboi, H.D. Sakai, N. Nur, A. Suwanto, K.M. Stedman, and N. Kurosawa. Sulfurisphaera javensis sp. nov., a thermoacidophilic archaeon isolated from Indonesian hot spring, and reclassification of Sulfolobus tokodaii as Sulfurisphaera tokodaii comb. nov. (2018) International Journal of Systematic and Evolutionary Microbiology, 68(6), 1907-1913. PMID: 29671720. https://doi.org/10.1099/ijsem.0.002765.
Berliner A.J., Mochizuki T., Stedman K. (2018). Astrovirology: Viruses at Large in the Universe. Astrobiology, 2018 Jan 10. https://doi.org/10.1089/ast.2017.1649
2017
Iverson, E. A., Goodman, D. A., Gorchels, M. E., & Stedman, K. M. (2017). Genetic analysis of the major capsid protein of the archaeal fusellovirus SSV1: Mutational flexibility and conformational change. Genes, 8(12). https://doi.org/10.3390/genes8120373
Iverson, E. A., Goodman, D. A., Gorchels, M. E., & Stedman, K. M. (2017). Extreme Mutation Tolerance: Nearly Half of the Archaeal Fusellovirus Sulfolobus Spindle-Shaped Virus 1 Genes Are Not Required for Virus Function, Including the Minor Capsid Protein Gene vp3. Journal of Virology, 91(10), e02406-16. https://doi.org/10.1128/JVI.02406-16
2016
S. Lim, S. T. Lance, K.M. Stedman and A. Abate. PCR-activated cell sorting for characterizing virus-host relationships. (2016) J. Virological Methods. 242: 14-21 https://doi.org/10.1016/j.jviromet.2016.12.009
Diemer, G. S., & Stedman, K. M. (2016). Modeling Microvirus Capsid Protein Evolution Utilizing Metagenomic Sequence Data. Journal of Molecular Evolution, 83(1–2), 38–49. https://doi.org/10.1007/s00239-016-9751-y
S. T. Lance, D. J. Sukovitch, K.M. Stedman and A. R. Abate. Peering Below the Diffraction Limit: Robust and Specific Sorting of Viruses with Flow Cytometry. (2016) Virology J. 13:201 https://doi.org/10.1186/s12985-016-0655-7
2015
Iverson, E., & Stedman, K. (2012). A genetic study of SSV1, the prototypical fusellovirus. Frontiers in Microbiology, 3(JUN). https://doi.org/10.3389/fmicb.2012.00200
Stedman, K. M. (2015). Deep Recombination: RNA and ssDNA Virus Genes in DNA Virus and Host Genomes. Annual Review of Virology, 2(1), 203–217. https://doi.org/10.1146/annurev-virology-100114-055127
Stedman, K. M., DeYoung, M., Saha, M., Sherman, M. B., & Morais, M. C. (2015). Structural insights into the architecture of the hyperthermophilic fusellovirus SSV1. Virology, 474, 105–109. https://doi.org/10.1016/j.virol.2014.10.014
2014
Stedman, K. M., DeYoung, M., Saha, M., Sherman, M. B., & Morais, M. C. (2015). Structural insights into the architecture of the hyperthermophilic fusellovirus SSV1. Virology, 474, 105–109. https://doi.org/10.1016/j.virol.2014.10.014
2013
Stedman, K. (2013). Mechanisms for RNA capture by ssDNA viruses: Grand theft RNA. Journal of Molecular Evolution. https://doi.org/10.1007/s00239-013-9569-9
Laidler, J. R., Shugart, J. A., Cady, S. L., Bahjat, K. S., & Stedman, K. M. (2013). Reversible Inactivation and Desiccation Tolerance of Silicified Viruses. Journal of Virology, 87(24), 13927–13929. https://doi.org/10.1128/JVI.02825-13
Ceballos, R. M., Marceau, C. D., Marceau, J. O., Morris, S., Clore, A. J., & Stedman, K. M. (2012). Differential virus host-ranges of the Fuselloviridae of hyperthermophilic Archaea: Implications for evolution in extreme environments. Frontiers in Microbiology, 3(AUG). https://doi.org/10.3389/fmicb.2012.00295
2012
Diemer, G. S., & Stedman, K. M. (2012). A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses. Biology Direct, 7. https://doi.org/10.1186/1745-6150-7-13
2011
DeYoung, M., Thayer, M., van der Oost, J., & Stedman, K. M. (2011). Growth phase-dependent gene regulation in vivo in Sulfolobus solfataricus. FEMS Microbiology Letters, 321(2), 92–99. https://doi.org/10.1111/j.1574-6968.2011.02313.x
2010
Laidler, J. R., & Stedman, K. M. (2010). Virus Silicification under Simulated Hot Spring Conditions. Astrobiology, 10(6), 569–576. https://doi.org/10.1089/ast.2010.0463
2007
Clore, A. J., & Stedman, K. M. (2007). The SSV1 viral integrase is not essential. Virology, 361(1), 103–111. https://doi.org/10.1016/j.virol.2006.11.003